Multi-scale hypergraph meets LLMs: Aligning large language models for time series analysis

Recently, there has been great success in leveraging pre-trained large language models (LLMs) for time series analysis. The core idea lies in effectively aligning the modality between natural language and time series. However, the multi-scale structures of natural language and time series have not been fully considered, resulting in insufficient utilization of LLMs capabilities. To this end, we propose MSH-LLM, a Multi-Scale Hypergraph method that aligns Large Language Models for time series analysis. Specifically, a hyperedging mechanism is designed to enhance the multi-scale semantic information of time series semantic space. Then, a cross-modality alignment (CMA) module is introduced to align the modality between natural language and time series at different scales. In addition, a mixture of prompts (MoP) mechanism is introduced to provide contextual information and enhance the ability of LLMs to understand the multi-scale temporal patterns of time series. Experimental results on 27 real-world datasets across 5 different applications demonstrate that MSH-LLM achieves the state-of-the-art results.

Multi-Integration of Labels across Categories for Component Identification (MILCCI)

Many fields collect large-scale temporal data through repeated measurements (trials), where each trial is labeled with a set of metadata variables spanning several categories. For example, a trial in a neuroscience study may be linked to a value from category (a): task difficulty, and category (b): animal choice. A critical challenge in time-series analysis is to understand how these labels are encoded within the multi-trial observations, and disentangle the distinct effect of each label entry across categories. Here, we present MILCCI, a novel data-driven method that i) identifies the interpretable components underlying the data, ii) captures cross-trial variability, and iii) integrates label information to understand each category's representation within the data. MILCCI extends a sparse per-trial decomposition that leverages label similarities within each category to enable subtle, label-driven cross-trial adjustments in component compositions and to distinguish the contribution of each category. MILCCI also learns each component's corresponding temporal trace, which evolves over time within each trial and varies flexibly across trials. We demonstrate MILCCI's performance through both synthetic and real-world examples, including voting patterns, online page view trends, and neuronal recordings.

Visual Reasoning over Time Series via Multi-Agent System

Time series analysis underpins many real-world applications, yet existing time-series-specific methods and pretrained large-model-based approaches remain limited in integrating intuitive visual reasoning and generalizing across tasks with adaptive tool usage. To address these limitations, we propose MAS4TS, a tool-driven multi-agent system for general time series tasks, built upon an Analyzer-Reasoner-Executor paradigm that integrates agent communication, visual reasoning, and latent reconstruction within a unified framework. MAS4TS first performs visual reasoning over time series plots with structured priors using a Vision-Language Model to extract temporal structures, and subsequently reconstructs predictive trajectories in latent space. Three specialized agents coordinate via shared memory and gated communication, while a router selects task-specific tool chains for execution. Extensive experiments on multiple benchmarks demonstrate that MAS4TS achieves state-of-the-art performance across a wide range of time series tasks, while exhibiting strong generalization and efficient inference.

Let Experts Feel Uncertainty: A Multi-Expert Label Distribution Approach to Probabilistic Time Series Forecasting

Time series forecasting in real-world applications requires both high predictive accuracy and interpretable uncertainty quantification. Traditional point prediction methods often fail to capture the inherent uncertainty in time series data, while existing probabilistic approaches struggle to balance computational efficiency with interpretability. We propose a novel Multi-Expert Learning Distributional Labels (LDL) framework that addresses these challenges through mixture-of-experts architectures with distributional learning capabilities. Our approach introduces two complementary methods: (1) Multi-Expert LDL, which employs multiple experts with different learned parameters to capture diverse temporal patterns, and (2) Pattern-Aware LDL-MoE, which explicitly decomposes time series into interpretable components (trend, seasonality, changepoints, volatility) through specialized sub-experts. Both frameworks extend traditional point prediction to distributional learning, enabling rich uncertainty quantification through Maximum Mean Discrepancy (MMD). We evaluate our methods on aggregated sales data derived from the M5 dataset, demonstrating superior performance compared to baseline approaches. The continuous Multi-Expert LDL achieves the best overall performance, while the Pattern-Aware LDL-MoE provides enhanced interpretability through component-wise analysis. Our frameworks successfully balance predictive accuracy with interpretability, making them suitable for real-world forecasting applications where both performance and actionable insights are crucial.

LISA: Laplacian In-context Spectral Analysis

We propose Laplacian In-context Spectral Analysis (LISA), a method for inference-time adaptation of Laplacian-based time-series models using only an observed prefix. LISA combines delay-coordinate embeddings and Laplacian spectral learning to produce diffusion-coordinate state representations, together with a frozen nonlinear decoder for one-step prediction. We introduce lightweight latent-space residual adapters based on either Gaussian-process regression or an attention-like Markov operator over context windows. Across forecasting and autoregressive rollout experiments, LISA improves over the frozen baseline and is often most beneficial under changing dynamics. This work links in-context adaptation to nonparametric spectral methods for dynamical systems.

Spatio-Temporal Transformers for Long-Term NDVI Forecasting

Long-term satellite image time series (SITS) analysis in heterogeneous landscapes faces significant challenges, particularly in Mediterranean regions where complex spatial patterns, seasonal variations, and multi-decade environmental changes interact across different scales. This paper presents the Spatio-Temporal Transformer for Long Term Forecasting (STT-LTF ), an extended framework that advances beyond purely temporal analysis to integrate spatial context modeling with temporal sequence prediction. STT-LTF processes multi-scale spatial patches alongside temporal sequences (up to 20 years) through a unified transformer architecture, capturing both local neighborhood relationships and regional climate influences. The framework employs comprehensive self-supervised learning with spatial masking, temporal masking, and horizon sampling strategies, enabling robust model training from 40 years of unlabeled Landsat imagery. Unlike autoregressive approaches, STT-LTF directly predicts arbitrary future time points without error accumulation, incorporating spatial patch embeddings, cyclical temporal encoding, and geographic coordinates to learn complex dependencies across heterogeneous Mediterranean ecosystems. Experimental evaluation on Landsat data (1984-2024) demonstrates that STT-LTF achieves a Mean Absolute Error (MAE) of 0.0328 and R^2 of 0.8412 for next-year predictions, outperforming traditional statistical methods, CNN-based approaches, LSTM networks, and standard transformers. The framework's ability to handle irregular temporal sampling and variable prediction horizons makes it particularly suitable for analysis of heterogeneous landscapes experiencing rapid ecological transitions.

Echo State Networks for Time Series Forecasting: Hyperparameter Sweep and Benchmarking

This paper investigates the forecasting performance of Echo State Networks (ESNs) for univariate time series forecasting using a subset of the M4 Forecasting Competition dataset. Focusing on monthly and quarterly time series with at most 20 years of historical data, we evaluate whether a fully automatic, purely feedback-driven ESN can serve as a competitive alternative to widely used statistical forecasting methods. The study adopts a rigorous two-stage evaluation approach: a Parameter dataset is used to conduct an extensive hyperparameter sweep covering leakage rate, spectral radius, reservoir size, and information criteria for regularization, resulting in over four million ESN model fits; a disjoint Forecast dataset is then used for out-of-sample accuracy assessment. Forecast accuracy is measured using MASE and sMAPE and benchmarked against simple benchmarks like drift and seasonal naive and statistical models like ARIMA, ETS, and TBATS. The hyperparameter analysis reveals consistent and interpretable patterns, with monthly series favoring moderately persistent reservoirs and quarterly series favoring more contractive dynamics. Across both frequencies, high leakage rates are preferred, while optimal spectral radii and reservoir sizes vary with temporal resolution. In the out-of-sample evaluation, the ESN performs on par with ARIMA and TBATS for monthly data and achieves the lowest mean MASE for quarterly data, while requiring lower computational cost than the more complex statistical models. Overall, the results demonstrate that ESNs offer a compelling balance between predictive accuracy, robustness, and computational efficiency, positioning them as a practical option for automated time series forecasting.

LASS-ODE: Scaling ODE Computations to Connect Foundation Models with Dynamical Physical Systems

Foundation models have transformed language, vision, and time series data analysis, yet progress on dynamic predictions for physical systems remains limited. Given the complexity of physical constraints, two challenges stand out. $(i)$ Physics-computation scalability: physics-informed learning can enforce physical regularization, but its computation (e.g., ODE integration) does not scale to extensive systems. $(ii)$ Knowledge-sharing efficiency: the attention mechanism is primarily computed within each system, which limits the extraction of shared ODE structures across systems. We show that enforcing ODE consistency does not require expensive nonlinear integration: a token-wise locally linear ODE representation preserves physical fidelity while scaling to foundation-model regimes. Thus, we propose novel token representations that respect locally linear ODE evolution. Such linearity substantially accelerates integration while accurately approximating the local data manifold. Second, we introduce a simple yet effective inter-system attention that augments attention with a common structure hub (CSH) that stores shared tokens and aggregates knowledge across systems. The resulting model, termed LASS-ODE (\underline{LA}rge-\underline{S}cale \underline{S}mall \underline{ODE}), is pretrained on our $40$GB ODE trajectory collections to enable strong in-domain performance, zero-shot generalization across diverse ODE systems, and additional improvements through fine-tuning.

T-LLM: Teaching Large Language Models to Forecast Time Series via Temporal Distillation

Time series forecasting plays a critical role in decision-making across many real-world applications. Unlike data in vision and language domains, time series data is inherently tied to the evolution of underlying processes and can only accumulate as real-world time progresses, limiting the effectiveness of scale-driven pretraining alone. This time-bound constraint poses a challenge for enabling large language models (LLMs) to acquire forecasting capability, as existing approaches primarily rely on representation-level alignment or inference-time temporal modules rather than explicitly teaching forecasting behavior to the LLM. We propose T-LLM, a temporal distillation framework that equips general-purpose LLMs with time series forecasting capability by transferring predictive behavior from a lightweight temporal teacher during training. The teacher combines trend modeling and frequency-domain analysis to provide structured temporal supervision, and is removed entirely at inference, leaving the LLM as the sole forecasting model. Experiments on benchmark datasets and infectious disease forecasting tasks demonstrate that T-LLM consistently outperforms existing LLM-based forecasting methods under full-shot, few-shot, and zero-shot settings, while enabling a simple and efficient deployment pipeline.

TSAQA: Time Series Analysis Question And Answering Benchmark

Time series data are integral to critical applications across domains such as finance, healthcare, transportation, and environmental science. While recent work has begun to explore multi-task time series question answering (QA), current benchmarks remain limited to forecasting and anomaly detection tasks. We introduce TSAQA, a novel unified benchmark designed to broaden task coverage and evaluate diverse temporal analysis capabilities. TSAQA integrates six diverse tasks under a single framework ranging from conventional analysis, including anomaly detection and classification, to advanced analysis, such as characterization, comparison, data transformation, and temporal relationship analysis. Spanning 210k samples across 13 domains, the dataset employs diverse formats, including true-or-false (TF), multiple-choice (MC), and a novel puzzling (PZ), to comprehensively assess time series analysis. Zero-shot evaluation demonstrates that these tasks are challenging for current Large Language Models (LLMs): the best-performing commercial LLM, Gemini-2.5-Flash, achieves an average score of only 65.08. Although instruction tuning boosts open-source performance: the best-performing open-source model, LLaMA-3.1-8B, shows significant room for improvement, highlighting the complexity of temporal analysis for LLMs.